PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05166 FitnessBrowser__Burk376:H281DRAFT_05166 (533 amino acids)

SeqID: H281DRAFT_05166 FitnessBrowser__Burk376:H281DRAFT_05166
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6166548: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05166 FitnessBrowser__Burk376:H281DRAFT_05166
MSDSFYSDGAAAQPATRPEQAAPRLMLKGITKQYPAVRANDDVTLIVAPGEIHAVLGENG
AGKSTLMKVIYGAVRPDAGEIQWEGEAVDIASPAAARKLGIGMVFQHFSLFETLTVGENI
ALALDEPFDLKALSKRIREVSADYGLDIDPQRHVHSLTVGERQRVEIVRCLLQNPRLLIM
DEPTSVLTPQAVRKLFATLRRLAAEGCSILYISHKLDEIQELCDTATVMRGGRVTGHVKP
KEETHASLAQLMVGHSLPDYTRREHNPGAVLLDVKALSVTSDDPFGTSLENVSFAVHAGE
IFGIAGVSGNGQAELLSALSGEKRGLRADAVTICGKPAGRLGAGGRRALGFGFVPEERLG
RGAVPAMTLSENALLTAHRQKMVKSGWINSGAMRAFARRCIEAFDVRCGGSEALAQSLSG
GNLQKYIMGREILQAPKVLVVAQPTWGVDVGAAAFIRQQLLDLSASGVAILVISEELEEL
FDICDRIAVLAGGRLSPVRATGATNAEEIGRWMAGLFGGREGTAPSAEQPAHV