PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05513 H281DRAFT_05513 branched-chain amino acid transport system permease protein (597 amino acids)

SeqID: H281DRAFT_05513 H281DRAFT_05513 branched-chain amino acid transport system permease protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 71164840: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane (This protein may have multiple localization sites.) 10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05513 H281DRAFT_05513 branched-chain amino acid transport system permease protein
MSAEQNALGLRRARKAPYFLCAILLAGLPWIWSGGFGIHIAQSFCYTAIAVIGVNLLVGL
SGQMSLGQAAFYAIGAYASVLTSLKLGWPIAASVLFGVAVAAAVGTVVGVFALRTRGLYL
AMTTLAVGFVVSILAQRWVGLTGGTMGLSGVPQVDFGDTIHGEIWYLYVVGGTLLVVQIL
NDYVFDSRIGRCLLATRDSEAFAASVGIKVPIVRSAIFAVSAALAGLSGGLFAHQSGFVG
SDAFSVTLSLSLLIAAVIGGLGARIGPLAGTAILMTIVELVAGLDRYGLMVYGGIMLLVL
LVFPQGAAGIVDIWRKPKSARKGSPSPENRSEAIARVDLQLDGCSLTVESVSKQYGGVLA
VSDVSFSVAAGQIHGLIGPNGAGKSTLVNLIAGNYLCDSGRVRLDGADVSNLVTADRAKR
GLARTFQNLQLVEALPVLENVLLGMSSADGHVANFAKWWMGRAFDLPERREALEILAFFG
IEHLCQAYPTELSYGHRKLVELARAIAQRPRLMLLDEPIAGLNGAEAMEVAKVVGRLRDA
GVTILLIEHNMEFVMSLCDSISVLEQGRLIGTGTPEEIRSDERILRAYLGTDEAMKC

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory