PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05562 FitnessBrowser__Burk376:H281DRAFT_05562 (1163 amino acids)

SeqID: H281DRAFT_05562 FitnessBrowser__Burk376:H281DRAFT_05562
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05562 FitnessBrowser__Burk376:H281DRAFT_05562
MRIGEDDRVLEAGSQKGLTLDDKYVLDAGSGYMTGIQAIVRLALAQHRRDATAGLKTAAF
ISGYRGSPLGNLDTALWQAGKHLTAHDVVFQPGVNEDLAATAVWGSQQSQLAGQGKFDGV
VGWWYGKGPGVDRSGDVLRHANLAGTAAHGGAVALYGDDHSCKSSSIPHQSEHVMIGCGL
PIFYPTSVQEVLDFGVHAVAMSRATGLWTSMKLVSEIVETSASVDVDARRVSPNVTFDSP
VPSGGLNIRWPDRSLAQEERLYQYKLPAALAYARANAINQVAWPCANARIGIAASGKGYL
DTVEALRILGVEGEAARRIGLRLFRVGMIWPLEPAGLRVFAAGLQELIVVEEKRPILEAQ
IKDELYALPDDLRPRVIGKATDGHGEWSTPRSDAPLISHYELQPEPIAKMLASRLLRFEL
PEDIRQQIEQRVQAIEHAERESRKVIDIAERKAYFCSGCPHNTSTVVPTGSRSLGGIGCH
FLTLTMDRGTETFTQMGGEGANWVGTAPFTKESHVFTNLGDGTYFHSGYMAIRQAVAANV
NITYKILYNDAVGMTGGQHVDGQLSVGQLTRQLAAEGVGQQIVVSDEPGLIGEAGLAPGV
TVRHRSELDAVQRYLRTVTGVTALIYAQTCASEKRRRRKRNEYPDPDQRVFINSEICEGC
GDCSKKSNCLSVEPLETALGTKRQINQSSCNKDFSCTDGFCPSFVTVHARDVKRPAGFAG
LPDGWPVAPRMPALDLPLRIVVGGVGGTGVVTIGALLGTAAHLEGKAIRVMDMAGMAQKG
GTVYSYVQLALKDDAISATRVAAGQCDLLIGADAVVAGNGTTLSRMRSDALAIVNEDGSP
TSEFIRSRDWTAPVSDLLERLRARVNTGRVIALPAAQVATRILGDAIFANLMLLGMAWQA
GRIPLARASLERAIELNGTAVAKNLEAFRVGCHLVTEPALVRSILGHQSNEPVSQTLDDL
IEDRAARLKKYWKSSYANQYRRLLEPARRKMPEDLMITVATQLYRVMAYKDEYEVARMLV
SADFRRSIDDTFGAGVRLTYHLAPPTLGTGKDVKKRKYGQWVQWPMTILGKMQWLRETPL
DPFGRNDERRRERDWRDLYMSFVESLGSASSSRFDASVVREMARLPAEVRGFGHVKIQAM
DIASRRWTELASRLIPAAKQEEL