PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05846 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) (760 amino acids)

SeqID: H281DRAFT_05846 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05846 H281DRAFT_05846 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
MDEQLKQSALAYHQNPKPGKISVTPTKPLSNQLDLSLAYSPGVAAACMAIYDEPLDAQKY
TSRGNLVGVITNGTAVLGLGNIGPLAAKPVMEGKGCLFKKFAGIDVFDIELAESDPDKLV
EAIAMLEPTLGGINLEDIKAPECFYIEKKLRERMKIPVFHDDQHGTAIIASAAILNGLKV
VGKKLDEVKLVCSGAGAAAIACLDLLVNLGLSKQNILVVDSKGVIYEGRGNLDPSKERYA
ASTEARTLADAIRGADVFLGCSSAGVLKPEMVAEMGTQPLILALANPEPEIRPEEAKKVR
PDCIIATGRSDYPNQVNNVLCFPFIFRGALDVGATTITEEMKLACVRAIAELAEETDQGD
EVAKAYEGHSLEFGPEYLIPKPFDPRLIIKIAPAVAQAAMDSGVATRPIKDMDAYREELG
TTVYRTGMVMRPVFAAAKSEPARIVFAEGEDERVLRAAQFVLLEKIAKPILVGRPSVIEM
RLKKMGSKLRCGEDFEIVDPEDDPRYQQCWQAYHELGAREGVTPDVAKAAMRKFNTLIGA
ILVRLGEADGMICGMIGQYHTHLKFIEQVLGKADNVQNFAAMNLLMLPGRNLFICDTYVN
ETPTAEQLADMTMLASREIEKFGITPKVALLSNSNFGSAPSASSQRMATARKLIVERAPT
LEIDGEMHGDAALSEMVRKAAFPGTTLSGEANLLIMPNVEAANIAYNLLKMVGGDGVTVG
PFLLGAEKPVHVLTPAATVRRIINMTAVASANARKSVNSK