PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05870 FitnessBrowser__Burk376:H281DRAFT_05870 (283 amino acids)

SeqID: H281DRAFT_05870 FitnessBrowser__Burk376:H281DRAFT_05870
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15597400: probable binding protein component of ABC transporter[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05870 FitnessBrowser__Burk376:H281DRAFT_05870
MKLATKGAKAALLFAATAVSGLLALSACTKVATPEQGPAAAAPASTLQAVLQRGTLRVGD
CLTFAPFGFYDKDGNADGYDVDLAKELAKQMGVKLEVVNTTSANRIPNLQTAKVDVVFCN
FTRNLERAKVVEFTSPYVVASEAMLVKKSSGIQSAKDMNGRTIATVKGSTNGDEVRSMGI
PVKIQEYDSSQAAILAVKQGQADAMIEDNNFLAYQAKLDPELTVTNEALVPLEYNAFGVK
AGDQAWLNYLNLFLFNINASKLNAQLYKKWFGVDPRYPLNPQF