PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05933 FitnessBrowser__Burk376:H281DRAFT_05933 (304 amino acids)

SeqID: H281DRAFT_05933 FitnessBrowser__Burk376:H281DRAFT_05933
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596835: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05933 FitnessBrowser__Burk376:H281DRAFT_05933
MNYASILEQIHRDLRPFLGTGKVADYIPQLATVPADSFGMAIVTPSGEVFTIGEADTRFS
IQSISKLFACTMAFRLLGDELWQRVGREPSGNAFNSLVQLEAEHGKPRNPFINAGALIVT
DVLCRRFVRAETALVEFMRRLTGEASIDYDLRVAQSELQHAHRNRAMAHFMASFGNMEMA
PEVVVDAYCRQCAISMSCVELAKAALFLTNHGVAPSTGERILDTSSAKRLSALMLTCGTY
DAAGDFVYRVGLPAKSGVGGGIVAVLPGEMAVCVWSPGLDANGNSLAGVLALEWLTTYTG
QSIF