PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_05935 FitnessBrowser__Burk376:H281DRAFT_05935 (609 amino acids)

SeqID: H281DRAFT_05935 FitnessBrowser__Burk376:H281DRAFT_05935
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_05935 FitnessBrowser__Burk376:H281DRAFT_05935
MCGIVGAVDRRDVTSMLTEGLRRLEYRGYDSCGIAVLQQGALRRVRSVARVANLAAEVAQ
ANLSGMIGIAHTRWATHGAPVARNAHPIFSSGEIAIVHNGIIENHESLREELKVLGYVFE
SDTDTEVVAHLIHHAWQKESSGDLLSAVRHALARLHGAYAIAVFARNDPHRVIGARAGSP
LVVGLGDQGNYLASDAMALAGTVEKFIYLEEGDMAELTLDGVRVVDQRGNTVQREVKLQH
SNTHAVELGPYRHYMHKEIFEQPSVIADAIEAVHSISADLFGPGARHAFREIDSLLIVAC
GTSYYAGMTAKYWFESLAKVPTQVEVASEYRYRSSVANPHTLVVVVSQSGETADTLAALK
HAQSQGHRHTLAICNVASSTMMRQAQFQHLTSAGPEIGVASTKAFSTQLVALFLLALTLS
KQRGRLPAAQEAEYLDQLHQLPARLNSVLALEAQIIAWAEAFARTEHALFLGRGLHYPIA
LEGALKLKEISYVHAEAYPAGELKHGPLALVTSQMPVVAIAPNDALLDKLKSNIQEVRAR
SGQLYVFADQDSRIASEDGLRVIRMPNHYGCLSPILHVVPLQLLAYHTACARGTDVDKPR
NLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory