PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06049 FitnessBrowser__Burk376:H281DRAFT_06049 (1153 amino acids)

SeqID: H281DRAFT_06049 FitnessBrowser__Burk376:H281DRAFT_06049
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06049 FitnessBrowser__Burk376:H281DRAFT_06049
MKRDDPSQGTSEAQASTATATATKARARRRGKPATLSDDPLWYKDAIIYQVHIKSFFDAN
NDGVGDFPGLIAKLDYIAELGVNAIWLLPFYPSPRRDDGYDIADYRNVHPDYGQLSDVKR
FIQEAHARGIRVITELVINHTSDQHPWFQRARRAKPGSNHRNFYVWSDTDQKYQETRIIF
IDSEPSNWTHDPVAGAYYWHRFYSHQPDLNFDNPAVLREVLQIMRFWLDMGIDGLRLDAV
PYLVEREGTNNENLPETHAILKKIRATIDAEYPNRMLLAEANQWPEDVKEYFGDEDECHM
AFHFPLMPRIYMSIASEDRFPITDIMRQTPDLAETNQWAIFLRNHDELTLEMVTDSERDY
LWNTYASDRRARLNLGIRRRLAPLMERDRRRIELINSLLLSMPGTPVIYYGDELGMGDNI
HLGDRDGVRTPMQWSSDRNGGFSRADPEQLVLPPVMGSLYGFDAVNVEAQSRDPHSLLNW
TRRMLATRRAKQTFGRGTIRFLKPENRKILAYLREMPNEPPILCVANLSRAPQAVELDLS
EFNGSVPIEMTADSVFPPIGQLTYLLTFPPYGFLWFMLCPGGQRPTWSQAHPEPLPEFVT
IVIREGQVGPTPENVRLLESEVLPSWLSRRRWFASKDQKMHAVRLAALTTIPNGGFAFTE
IEADVGDHTERYVVPIAITWGGETTTPLFLQLALARVRRGRNVGHLTDAFALPIFAHGVM
RKLRERAVIPTVQKSEIRFIPTERFAELENLGERPEIRWLAAEQSNSSLIIADAAVLKLV
RRLVSGIHPEAEISRYLTQLGYANTAPLFGEVVRVDPEGVPHTLAILQGYVDNQGDAWNW
SLDHLRRSVDELAIAVDTDASSTPDRGNETLLLEGYSSLAGIIGRRLGQLHVALASPTDD
PAFAPEQASAEQVKAWVDGTQSMLASALDLLAPRVEQMLDAETKALAKSLVDRRAALVEA
VNKLVSPDTQAQRIRIHGDFHLGQVLVAQGDAYLIDFEGEPARSLEERRQKSSPLRDVAG
LMRSLSYASAAAQSTMESAPQQTADRKRSLFDRFRVQATETFLKEYRAATAEAPTPLVAP
EAEQALLDLFLIEKAAYEIRYEAANRPAWLSLPVRGLAALAGRLLGDKTTSHDSSTQAQD
AATPPHPAEGDYE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory