PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06109 FitnessBrowser__Burk376:H281DRAFT_06109 (252 amino acids)

SeqID: H281DRAFT_06109 FitnessBrowser__Burk376:H281DRAFT_06109
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1730032: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06109 FitnessBrowser__Burk376:H281DRAFT_06109
MASMFSLDGRRAVVTGAASGIGAAIALAYAQAGARLVLADLNEARLAAHADACRANGVEV
QTIVADVGDETGAHGIVDRCIAAYGGIDILVNNAGMLTQARCTDLTTQMWDDMLRVDLRS
VFLCSRRALPSMTAQRWGRIINVASQLGIKGGAELTHYAAAKAGVIGFTKSLALEAAPDN
VLVNAIAPGPIETPLVDGISASWKEAKSKELPLRRFGRADEVAPTAVLLASDPGGNLFVG
QTLGPNSGDVMP