PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06130 FitnessBrowser__Burk376:H281DRAFT_06130 (1176 amino acids)

SeqID: H281DRAFT_06130 FitnessBrowser__Burk376:H281DRAFT_06130
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06130 FitnessBrowser__Burk376:H281DRAFT_06130
VDMRTPEVERAIDHDYRLEDRYLREEGTVFLTGTQALVRILFEQARSDRRLGIKSAGLVS
GYRGSPLGGFDQELWRRKKLLKDADIRFEPGLNEDLGATMVWGAQQIDAFPGKRVDGVFA
MWYGKGPGVDRTGDVFRNANILGTSARGGVLAVAGDDHAAQSSMFPHQTDHVFEGAMMPI
IFPASVEEYVKFGLAGYAMSRFSGLWVAYKAITETVESGRSMVVGRSDRANAGFLTPSDV
EVPAGRGFNYDPKLPWPSERTELERRIIEERLPAALAFARANPFDNTLVRPRDARVGIVT
VGKAHGDVLSALAKLGLDAAEMERLGIGLYKVGMTWPLETAGVHNFARGMSALMVVEEKR
SFVERQIKESLFNVKASERPDVFGKELGDNSSLVPATLELSPGQVADSLRKFLAYTNVAV
DVPTPAPIASSGRKSFPILTDGEDSVLTRKPFFCAGCPHNTSTKLPDGSYAAAGIGCHIM
ALGDAGSTATFCQMGGEGIQWVGLSTFTEMPHMFINLGDGTYQHSGSLAIRQAVAAKANV
TYKILFNDAVAMTGGQPTEGGLTVRRVVEQVQAEGVASVTIVTDDTSKYAATAPGNAAVV
HRDELDSLQRDLRKKKGVSVIVYEQTCAAEKRRRRKRGTMRTAPARVVINPAVCEGCGDC
SVQSNCIAIEPLDTEVGRKRAVNQSTCNKDTSCVKGFCPSFVTVEGLEPRKPDQARTEAV
ENELRQQLGNPLPVPPEIRQHARIVVTGIGGTGVVTIGAILSMAAHLEGRGASTLDFTGL
AQKNGAVLSHVQIASSRGEISTSRIERQSANVLIGCDAVVASSKDALSRLVFNSTQTVIN
THITPTSDFVKNGDLALSESAHRKSIVAAVGDATSIFWNCNAAAETIFGDSIACNMMMVG
FAFQRGMIPLSEAAIMRAIELNGAAVSMNKRAFLWGRLIAHDGCAIDRLTETPVCVEEQF
DLDQFVRSRMDDLTSYQNAAYAQRYKMLVDHVSAVERRVRGAVGDLTASAARSYFKVLAY
KDEYEVARLHSDGSFSKRLAETFEGEGKFTYHMAPPVISRVDSRTGRRNKVALGGWWLKP
MLRVLKHGKLLRGSVLDPFSRQSDRRLERALIREFEDDVELALAHLSLTNHKAALDLITL
PLAIRGFGVVKENSYKAAQQRRCAYRTELSNGLCRS