Running PSORTb v3.0 on H281DRAFT_06210 FitnessBrowser__Burk376:H281DRAFT_06210 (898 amino acids)
SeqID: H281DRAFT_06210 FitnessBrowser__Burk376:H281DRAFT_06210 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 54294577: aconitate hydratase [Legionella pneumophila str. Lens]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 7.33 CytoplasmicMembrane 2.64 Periplasmic 0.03 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: Unknown (This protein may have multiple localization sites.) -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>H281DRAFT_06210 FitnessBrowser__Burk376:H281DRAFT_06210 MSSIRMEDVLWTTLETASGPLRYADLKRAEAQGFAPLSELPVSLRILLENAMRRGGVDDV AAIRDWLTRRESDREISFFPVRVLMPDSSAVPLVADLAAMRDAVRKKGGDSWRVNPLIPV DIVVDHSAITDHAGRSDAFDLNLALEYQRNHERYAFLKWAQNAFDNVRVVPPATGIVHQV NLEFLAAGVQTVVIDDVTFVVPDTLVGMDSHTTMVNSIGVLGWGVGGIEAAAAILGQPIS MLLPRVIGCRISGRPRSGVTCTDIVLSLTEFLRGKKVVGCFVEFFGEGLDNLPVSDRATI ANMAPEAGATMCFFPPDAATIEYLHATGRSREQVAVAEAVLKAQGIWRPEAGADEERIAY SDRLEFDLSAVTPSMAGPKRPQDRVDLKDVSARFHREFGLTAEGRGLTNGSVVIAAITSC TNTSNARAMIGAGLIARNLRARGVKPKAWVKTSLSPGSRVVTDYLRESGLQDDLDSLGFN LTGYGCMTCAGSSGQLDAEVARRILSEGLVVATVLSGNRNFEGRTHPLARANFLGSPALV VAYACAGTILRDLTTEPIADEADGQPVMLADVWPDDADIDAIFRRIVTLTMFKRVYATAF QGEARWQRIAAASGDHFDWDQASTYIRRPPYFDAGFADDGFGMANIVGARALLMLGDSIT TDHISPVGVIRSETEAGRFLHGAGVAPSDFNTLLSRRANHDVMMRGTFANVRLRNEMTPD REGPWSRHVPSGDVMRVFQAASRYRDERVPLIVIAGADYGAGSSRDWAAKGPRLLGVRAV IAESFERIHRSNLVGMGILPLQFPPGTTRKTLGLTGEESFTIFGIEGALQPHQRIECEVS RANGARDSITLICRLDIPREIAWYRHGGVLQYIAAQLLLPAAAVTEQHLASQLNGASS
Lawrence Berkeley National Laboratory