PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on H281DRAFT_06396 FitnessBrowser__Burk376:H281DRAFT_06396 (354 amino acids)

SeqID: H281DRAFT_06396 FitnessBrowser__Burk376:H281DRAFT_06396
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 79076: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>H281DRAFT_06396 FitnessBrowser__Burk376:H281DRAFT_06396
VIDTSKAADTKAVTRASQPVPRHALHRYRFLLLALLVVCILPLTLRSGSLATEVLVFALA
ALGCNLLLGHTGLLSFGQGIFFGLGSYSAGLVLTRAALPVPVALLAAIAVGAIAAALVGW
FSIRQRGTYFVMLTLAFGQLFYFLAYTTPDLTGGDNGLLDIPRPALGLPGKALIPLASPW
QYYGFVAVLFLVVFWLLMRVSHSVFGRTLLAIRDNEARAAAVGYDVKRFKLMAFVISGAV
TGLAGALHALMTGIAPLSNIDYHTSEMILVMTVIGGTGNLFASVLGAAFYVLFADWLSTL
WPRWLLLLGIVLMAVSLYMQRGLWGLGERIWHALRRNDKADADAAADDTAKERA