PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS00835 FitnessBrowser__HerbieS:HSERO_RS00835 (254 amino acids)

SeqID: HSERO_RS00835 FitnessBrowser__HerbieS:HSERO_RS00835
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16128794: molybdopterin synthase sulfurylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS00835 FitnessBrowser__HerbieS:HSERO_RS00835
MDDQQLLRYSRHILLDEIDIDGQTRLLQGHALVIGAGGLGSPAAMYLASAGVGRITLVDH
DTVDLTNLQRQIMHTTARVGQPKVESGRQALEQINPGVQVTALAERVEAERLHALVAQAD
VVLDCSDNFATRHAVNRACVAAGVPLVSGAAIRFDGQVSVFDPRQDASPCYACLFPPERE
FEEVQCSTMGVFSPLVGIIGTMQAAEAIKLLAGIGRSLAGRLLILDAREMEWTSITVGRD
RQCPVCAKRHAQQA