PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS01305 FitnessBrowser__HerbieS:HSERO_RS01305 (397 amino acids)

SeqID: HSERO_RS01305 FitnessBrowser__HerbieS:HSERO_RS01305
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2492614: Acetate kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS01305 FitnessBrowser__HerbieS:HSERO_RS01305
MNRLLLTFNAGSSTIKLGVFRLDGARARKIGQGQLDLHLAPLKLRLEIDGERSEVEIDAD
PAAAMDRVLEQVLHQLEVGHAQGELCAVGHRVVHGGLHLAQAVRLDDAIETELENLAPLA
PLHQPQNLRLIRAIARLRPGLPQTASFDTAFHASQDALARRFALPRRLHEEGVLRYGFHG
ISYSYVAAEMRRQALPEAHARVVVAHLGNGASLCALHAGRSVDASTGFSTLDGVPMGTRC
GALDAGVLLYLLRQGMSLDELEDLLYHRSGLLGVSGLSADVRSLQQSQDSAAREALDLFA
LRCAGEAARLASTLGGIDALVFTAGIGEHDAAMRAAICERLGWLGVRLDPQANAAHAGRI
SRADSAVSVYVIPTNEEQVIADDAAALLLTSATGTPS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory