PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS01350 FitnessBrowser__HerbieS:HSERO_RS01350 (658 amino acids)

SeqID: HSERO_RS01350 FitnessBrowser__HerbieS:HSERO_RS01350
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS01350 FitnessBrowser__HerbieS:HSERO_RS01350
MSLRLGVCYYPEHWPEAMWDSDAQRMKALGIKQVRIGEFAWSRIEPSPGELRWDWLDRAI
EVLARHGLEVVMCTPTATPPKWLIDRHDDVLAVDANGRQRAFGSRRHYDFSSDSYFEESQ
RIVRLLGERYGQHPAVTAWQTDNEYGCHQTVVSYSASAQRRFRQWLRQRYGSIDALNTAW
GTVFWSMEYRSFDEIDAPIGTVTEAHPSHRLDYRRFASDEVARYNRMQVEILRALSPGRL
MVHNFMQMFLEFDHYPVAADLDVATWDSYPLGALEVMWFDDATKARWLRTGHPDFASFNH
DLYRGMSAQPFWVMEQQPGPVNWAHWNPHPLPGMVRLWSWEAFAHGAGCVSYFRWRQCPF
AQEQLHAGLNRPDNRLDVGGSEAEQVAREIITVEQAQGALAQPRGKVALLFDYDAKWLFD
IHFQGIDFEYQRFAFQYYATLRALGLDVDILPLHAKLDGYAMIVVPPLPIVPDDLPGRIA
ESGALSVFGPRSGSKTRSLQIPATLPPGPLQQLLPMRVWRVESLRPNVTEPVQFGAHSGQ
GAHWRDLIEADGEGLQTLAQFGDGHPAIVRKERAHYLAGIFDDALTSACFEQLARDAGLA
PQRLPEGLRLQERGGLCFAFNYSDAAITLPQAQGAQFLVGQAQLEPQGVAVYRTGQHP