PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS03055 FitnessBrowser__HerbieS:HSERO_RS03055 (305 amino acids)

SeqID: HSERO_RS03055 FitnessBrowser__HerbieS:HSERO_RS03055
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61229965: Inorganic polyphosphate/ATP-NAD kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS03055 FitnessBrowser__HerbieS:HSERO_RS03055
MWPIKLPVQAAVPKTVAIVGKFQAVGIAQILSDIAVFLESHGHTVVFEAETAENVALQGY
DSLTTEQIGQHADVAIVVGGDGTMLGIARQLAPYNVPLIGINQGRLGFITDIAQDRMIPA
LADMLEGKVEAESRSLLEARVYREGGEIFRALALNDVVVARGSTSGMVELRVEVDGRFMY
NQRSDGLIVATPTGSTAYALSAGGPILHPSLHGIVMVPISPHSLSNRPITLSDSCEIVIQ
VVSGREVSANFDMQSLTSVLHGDRIVIRRSAHKITFLHPQGWSYFDTLREKLHWNEYPSI
EGRLQ