PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS03330 HSERO_RS03330 branched-chain amino acid aminotransferase (306 amino acids)

SeqID: HSERO_RS03330 HSERO_RS03330 branched-chain amino acid aminotransferase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600206: branched-chain amino acid transferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS03330 HSERO_RS03330 branched-chain amino acid aminotransferase
MSMADRDGKIWKDGELIDWRDATVHVLTHTLHYGMGVFEGVRAYKTPDGTAIFRLQEHTR
RLRNSAKIFQMEVPYDHDTLAQAQRQVVRENQLESCYIRPLIWIGSEKLGVSAKGNQIHV
AVAAWSWGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALADGY
DEALLLDTEGYVSEGSGENVFIVKNGKIYTPDLASCLDGITRDAVLTMARDLGIEVIEKR
ITRDEMYCADEAFFTGTAAEITPIRELDRRVIGSGARGPVTEKLQTLFFDVVAGRAPQYK
HWLTLV