PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS04140 FitnessBrowser__HerbieS:HSERO_RS04140 (305 amino acids)

SeqID: HSERO_RS04140 FitnessBrowser__HerbieS:HSERO_RS04140
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596835: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    8.46
    Cytoplasmic            1.33
    Periplasmic            0.21
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    8.46

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS04140 FitnessBrowser__HerbieS:HSERO_RS04140
LPWKQILERAAQLSAACRHEGKVADYIPALACVAPDQFGMAVATIDGGVHCVGDGETRFS
IQSISKVFLLTMAYGSYGEDLWKRVGQHPSTNPFNSLIELELERGVPRNPFLNPGALAVA
DALLSRHTHLESAMVSLMRELSGSADLNYDSEVFNSELRSSSRHHAAAYLMQSHGNFSNE
VGEVVRAYCASCAIEASCVELARAGLFLANGGRDIASGRQLLSAREAQRVCALMLTTGTY
EYSGMTAFAIGLPTKSGVGGGVLAVIPGRGCICAWSPRLDPRGNSVRAMKALELVSNTAG
LSVFA