PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS04845 FitnessBrowser__HerbieS:HSERO_RS04845 (366 amino acids)

SeqID: HSERO_RS04845 FitnessBrowser__HerbieS:HSERO_RS04845
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS04845 FitnessBrowser__HerbieS:HSERO_RS04845
VTLELKQVAKTVGAETHLYPLDLNLAKGGINVLLGPTQAGKTSLMRIIAGLDKPTAGRVL
VDGQDVTGVGVRERNLAMVYQQFINYPGLTVFENIAAPLRLQKQPEQEISKRVKEIADKL
HIAHLLQRLPGELSGGQQQRCALARALIKRAPLVLLDEPLVNLDYKLREELRSELISLFA
TGDTTVVYATTEPQEALLLGGHTAVMHQGRLLQFAPTLELFNSPASTQVAAIFNDPPMNL
LEATAIASAPGVAAICMSDGSVLEIAGRPLALSEGQSCKLGIRCNDVRLEALTGPGVSLG
CSVTLAELSGSETYLHLRHGEVPLVAQLSGVHEVAIGSTVQVSIAAAKAFLFDTQGRLLS
APMETR