PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS04870 FitnessBrowser__HerbieS:HSERO_RS04870 (582 amino acids)

SeqID: HSERO_RS04870 FitnessBrowser__HerbieS:HSERO_RS04870
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.84
    Extracellular          0.14
    CytoplasmicMembrane    0.01
    OuterMembrane          0.01
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.84

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS04870 FitnessBrowser__HerbieS:HSERO_RS04870
MMQNMRKIKLTVLAAAMVMAGVAGNAWADIKAAEKWVDSEFQPSTLSRPQQVSEMQWFID
AAAKLKAKGVKEIHVVSETLDTHAYESKTLAKAFEEITGIKVIHDVIQEGDVVEKMQTSL
QSGKSIYDGWVNDSDLIGTHYRNGQTVVLTDYMAGPGKEYTNPGLDLKDFIGTSFTTAPD
GKLYQLPDQQFANLYWFRADWFARKDLQEKFKAKYGYELGVPQNWSAYEDIAAFFTNDVK
ELDGKKIYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGLPVDEWGIRVADDKCTPV
GASVARGGATNSPAAVYALTKYLDWMKKYAPPEALGMTFSEAGPVPAQGHIAQQIFWYSA
FTASMTKQGLPVVNADGSPKWRMAPGPHGPYWKDGMQNGYQDVGSWTFLKSTPPDQMAAA
WLYAQFTTSKTVSLKKSIVGVTFIRDSDIRSDYFTKNAAKYGGLIEFYRSPARVAWTPTG
TNVPDYPKMAQIWWKNISSAISGEKTPQGAMDNLADEMDGIMARLQRAGMKQCAPKLNPK
KDPATWLSDKGAPWAKLANEKPKGETIPYDKLLQAWKDGRVR