PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05095 FitnessBrowser__HerbieS:HSERO_RS05095 (335 amino acids)

SeqID: HSERO_RS05095 FitnessBrowser__HerbieS:HSERO_RS05095
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 731982: D-allose-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05095 FitnessBrowser__HerbieS:HSERO_RS05095
MMNKKSACVLVSALAAVGFASALQAQNKPIDIVTVVKITGISWFNRMEVGVKEFAAANPG
VTTRQIGPAQSDAAQQQRLVEDLVAKKVDAIAVVSMDPPTLEPVLKRALDRGIKVVTHEA
DNQKNTLVDIEAFDNTAYGARLNDRLAACMGQAGKWSSLVGSLGSQSQVQWADGGAANAA
KKYPKMTLVDAKNESANDAEKAYAKAKEILRKHPDIKGFQGSSSLDVLGIGRAVEEAGLQ
GKVCVYGTGLPSEAAKFLESGAVGGIAFWDPKDAGLAMNKAAMMLVQGKKITDGMDLGIP
GYNKVTVKKGPGVGVIVTGQAWVEVDKKNYKQYAF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory