PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05110 FitnessBrowser__HerbieS:HSERO_RS05110 (150 amino acids)

SeqID: HSERO_RS05110 FitnessBrowser__HerbieS:HSERO_RS05110
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16130711: L-fucose mutarotase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05110 FitnessBrowser__HerbieS:HSERO_RS05110
MLKNLHPLLNADVLYALRAMGHGDELVLCDANFPADSVARQTVLGKVLRIDGVGTTEAAR
AILSVLPLDNAVEQPVRRMEIMGEPATIPPVQQELQQEVNQAEGRARPLGSIERFAFYEA
AKKAYCVIATGERRFYGCFLLKKGVLPPEA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory