PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05350 FitnessBrowser__HerbieS:HSERO_RS05350 (359 amino acids)

SeqID: HSERO_RS05350 FitnessBrowser__HerbieS:HSERO_RS05350
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1170927: Homoserine O-acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.99
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05350 FitnessBrowser__HerbieS:HSERO_RS05350
MTLTFRLRHVARLLLSSAALMLCSAATQAADPPRPVEGDWVAPRFQFHTGQTLENLRLHY
VTLGDRANPAVLVLHGTYQSAQAMLSKDFGGQLFGPGQPLDASKYFIIIPDGIGVGKSSK
PSDGLRAAFPQYNYADMVLAQYRMLTEGMGITHLRLIIGNSMGGMQTWIWGGTYPGFADG
LVPMASQPTEMASRNWMMRRMLVESIKQDPAWNNGNYTTQPPSLRLANNMFVFATNGGTL
AYQAMAGSHAQADKLVDERLAAPVTADANDFIYQWGSSADYNAAPGLSKIKAPVLAINSA
DDERNPPETGVMQAALKEVPSAQLLLIPASAETRGHGTTGMARFYVRELEQFIKGLPAR