PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS05400 FitnessBrowser__HerbieS:HSERO_RS05400 (277 amino acids)

SeqID: HSERO_RS05400 FitnessBrowser__HerbieS:HSERO_RS05400
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 130690: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS05400 FitnessBrowser__HerbieS:HSERO_RS05400
MNKPPLFPPYTSLVERAWFFASRGFNLLVLLFLVSPILVMIPLSFSDSSFLMYPIKSFSL
RWYENLFSSDDWVRAAQNSFIVAPAATVIATVLGTLAAVGLNKADFRGKGILMAILISPM
IVPVVVVGVGVYLFFARIGLSDSYLGLILAHAALGAPFVVTTVLATLQGFNHNLVRASLS
LGASPLRTFFRVTLPVIAPGLISGALFAFATSFDEVVLTLFVAGPEQATLPRQMFAGIKD
NISPTIAALATILIIFSTCLLLALEWLRGRNKAAARF