PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS06560 FitnessBrowser__HerbieS:HSERO_RS06560 (351 amino acids)

SeqID: HSERO_RS06560 FitnessBrowser__HerbieS:HSERO_RS06560
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600429: probable aromatic hydrocarbon reductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS06560 FitnessBrowser__HerbieS:HSERO_RS06560
MSSYRIALNFEDGVTRIIDCGAKEKVLDAAFRNRINLPMDCSDGVCGTCKCRAESGLYDL
GDDYIDDALSSDEAGAGMVLTCQMVPQSDCVIAVPVASTACKTGTASFTGKVAGLSDLGG
AAFELVLEAPANAPAFLPGQYVNIGVPGSGQHRSYSFSSPSGASRMSFLIKNVPGGLMSN
WLAGASEGATLELTGPLGSFYLRPVKRPVLMLAGGTGLAPFLSMLEELAQQGLDQPVHLI
YGVTRDQDLVLVERLQALADRLPGFSFTTCVADPATTHARQGYVTQHMPAAVLHDGNVDV
YLCGPPPMVEAVQKHFQATGMQPASFYYEKFASSQPAVASASAAAAAAAAV