PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS06965 FitnessBrowser__HerbieS:HSERO_RS06965 (422 amino acids)

SeqID: HSERO_RS06965 FitnessBrowser__HerbieS:HSERO_RS06965
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS06965 FitnessBrowser__HerbieS:HSERO_RS06965
LGVLAALLIALPAAVIGWQWLGPEERGAATPAPDPTRQLAQGQYLARAGNCMACHTARGG
APYAGGRAIASPFGTLYTSNITPDKTTGIGQWSADDFWRALHHGRGKEGQFLYPAFPYTS
YTRLSRADSDALFAYLQSLPPVARANQAHTLRFPYDQRMLLGLWRALYFTPQSYQPDPRQ
DAQWNRGAYLVQGAGHCSACHSARNRLGASIEPLALAGGVIPALQWYAPPLHGGADGLQD
WSTADIAALLKTGVSPHAVTLGPMSEIVGRSLQYLNDADVSAMAVYLKSLPASAADDAAR
PASVEPAEAERIMKQGKQLYGTLCVDCHGGKGQGSAPDYPPLAGNRAIAGPHPANAVRAV
LNGGFPPSTAGNPYPFGMPPFGPQLSDQEVAAVVSYVRNSWGNQGGLVSAAEVNRYRSVP
LD