PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS07180 FitnessBrowser__HerbieS:HSERO_RS07180 (444 amino acids)

SeqID: HSERO_RS07180 FitnessBrowser__HerbieS:HSERO_RS07180
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598721: argininosuccinate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS07180 FitnessBrowser__HerbieS:HSERO_RS07180
MSNILQSVPVNQKVGIAFSGGLDTSAALTWMRQKGAIPYAYTANLGQPDEPDYDAIPKKA
MQYGAQQARLIDCREQLANEGIAALQSGAFHISTAGITYFNTTPLGRAVTGTMLVSAMRE
DNVDIWGDGSTYKGNDIERFYRYGLLVNPNLKIYKPWLDSTFIDELGGRKEMSEFMIKSG
FDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSGIKIVQPIMGVAFWRDDVEVKAETVTVR
FEEGRPVALNGKTFASMTELILEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALL
FIAYERLVTGIHNEDTIEQYRDNGRKLGRLLYQGRWFDSQAIMLRETAQRWVARAITGEV
TVELRRGNDYSILNTESPNLTYHPERLTMEKGEGSFSAIDRIGQLTMRNLDIADTRQKLA
IYQNTGLLESSTAVSLPLLGKDEK