PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS07845 FitnessBrowser__HerbieS:HSERO_RS07845 (229 amino acids)

SeqID: HSERO_RS07845 FitnessBrowser__HerbieS:HSERO_RS07845
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 401471: D-methionine transport system permease protein metI]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS07845 FitnessBrowser__HerbieS:HSERO_RS07845
MSALSSLFSQIDLSVIDWGEVGDATLETLAMTGGSLFFTVLLGLPLGILLFLTNRRQLLE
QRGLYLVLSLVVNVLRSVPFLILLIMLIPFTLWLVGTSLGVTGAIPPLVIGTAPFFARLT
ESVLREIDRGILEACTAMGARRRQIIFGALLPEALPGLLAAVTITAITLMSYAAMSGVIG
GGGLGDLAIRYGYQRFQTEVMVVTVAILVVLVQLLQFFGDRLVLRFTRK