PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS09190 FitnessBrowser__HerbieS:HSERO_RS09190 (617 amino acids)

SeqID: HSERO_RS09190 FitnessBrowser__HerbieS:HSERO_RS09190
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 20141681: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.59
    Cytoplasmic            0.41
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane (This protein may have multiple localization sites.) 9.59

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS09190 FitnessBrowser__HerbieS:HSERO_RS09190
MQQPQRVLDVNHLSVRFSTSERTVDAVRDLSFHVDQGETLAIVGESGSGKSVSSLAIMRL
IEHGGGKIASGSMQFLRRSGQRLDLAQADNATMRSIRGAEIAMIFQEPMTSLNPVFTVGE
QIAESIRLHQGLGRAAAQAEALRMLEMVRIPEAKRVLGRHPHQLSGGMRQRVMIAMALSC
KPSLLIADEPTTALDVTIQAQILQLIRSLQQEMQMGVIFITHDMGVVAEVADRVVVMCRG
EKVEENAVNPLFAAPAHPYTQSLLAAVPRLGSMRGTDKPLRFGIAPQAEARPDLIASELQ
AQAEIAAQRQPILKVRDLTTRFDVKSGIFGRVRQRVHAVEKVSFDLYAGETLAIVGESGC
GKSTTGRSLLRLVDIAGGKVEFGGRDLAQLPRSELRQLRRDIQFIFQDPFASLDPRMTVG
YSIMEPMLVHGMKEGAQERVDALLTRVGLTPEHGQRYPHEFSGGQRQRICIARALALNPK
IVIADESVSALDVSIQAQIVNLMLDLQAELGISFIFISHDMAVVERISHRVAVMYLGQIV
EIGPRRAIFENPQHPYTRKLMAAVPVADPTLRQPGKKLLTDEIPSPIRRVGDEPKVEPLQ
EVAPGHFVAQHRIAGAF