PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS09795 FitnessBrowser__HerbieS:HSERO_RS09795 (689 amino acids)

SeqID: HSERO_RS09795 FitnessBrowser__HerbieS:HSERO_RS09795
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [16 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506997: Carbon starvation protein A]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS09795 FitnessBrowser__HerbieS:HSERO_RS09795
MNRIVSRLGWLALALAGAGACAYVALQRGESINAVWLVVAAVCVYLIAYRFYSKFIADRV
LGLDGGRMTPAYKFNDGLDYVPTNKYVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMLWI
LAGVVFAGAVQDFMVLFISTRRDGRSLGDLIKSELGQVPGVIALFGAFMIMVIILAVLAL
IVVKALAESPWGSFTVAATIPIALFMGVYSRYIRPGRIGEVSWIGFVLLMLAIVGGQYVQ
EHPALGQMFTFDGKQLTWMLIGYGFVASVLPVWLLLAPRDYLSTFLKIGTILALALGIVF
IAPHLKMHAVTRFIDGSGPVWSGSLFPFLFITIACGAVSGFHALISSGTTPKLLENEKHA
RFIGYGAMLMESFVAIMALIAASCIEPGIYFAMNSPAALIGTTPENVAQVISQWGFHITP
EMLTHTAQAVGEHTIISRAGGAPTLAVGMAQILSGVTGEAMMAFWYHFAILFEALFILTA
VDAGTRAGRFMLQDLLGAFIPPMKRTDSWVASLIATGLCVAGWGYFLYQGVVDPLGGINT
LWPLFGISNQMLAGIALILATCVLFKMKRDRFAWVTVLPTAWLLACTLTAGWQKVFDANP
RVGFLAHASKYQAALDEGKLLAPAKSIEQMRQVIFNDYVDAGLAAMFMLVVISVLVFGIR
TVLKARSAHQPSVKEAPYETLPASALAQQ