PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS10460 FitnessBrowser__HerbieS:HSERO_RS10460 (436 amino acids)

SeqID: HSERO_RS10460 FitnessBrowser__HerbieS:HSERO_RS10460
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598931: homoserine dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS10460 FitnessBrowser__HerbieS:HSERO_RS10460
MKSIKVGLLGIGTVGSGTFNVLKRNQEEIARRAGRGIEITMVADLNTERATELTNGEVKV
VNDANLVVSNPDIDIVIELIGGYGIAKDLVLKAIANGKHVVTANKALIATHGNEIFKAAQ
EKGVMVAFEAAVAGGIPIIKALREGLTANRIQWIAGIINGTTNFILSEMRDKGLDFDVVL
KEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQFDKAHVEGITKLQASDITYAE
QLGYRIKLLGITRQTAKGIELRVHPTLIPAARLIANVEGAMNAVVVRGDAVGETLYYGKG
AGSEPTASAVIADLVDITRLATADPEHRVPYLAFQPNAMADTPVLPMSEVSTSYYLRMRV
ADQAGVLADVTRILADSTISIDAMLQKEPAEGEQQTDIIMLTHQTQEKNIEAAIAKIEAL
TTVMGTVTKIRLEELA