PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS10470 FitnessBrowser__HerbieS:HSERO_RS10470 (486 amino acids)

SeqID: HSERO_RS10470 FitnessBrowser__HerbieS:HSERO_RS10470
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598930: threonine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS10470 FitnessBrowser__HerbieS:HSERO_RS10470
MQYVSTRGHAATPSFSEILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVLR
KFATDIPEADLKALAHKTYTADVYRNTRAGEHAAEITPLRTLEEQGGKKLVLQSLSNGPT
LAFKDMAMQLLGNLFEYALAKQGAELNIVGATSGDTGSAAEYAMRGKKGIRVFMLSPHKK
MSAFQTAQMFSLQDPNIFNLAIEGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV
AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD
EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFVYDLLGRDSARVKDLFHKVETAGGF
DLSGQAGSDGNEFTSVIQYGFASGRSTHADRLETIRFAEKTYGITVDTHTADGIKVAREH
LTPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAYV
AQHTGL