PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS11455 FitnessBrowser__HerbieS:HSERO_RS11455 (458 amino acids)

SeqID: HSERO_RS11455 FitnessBrowser__HerbieS:HSERO_RS11455
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600299: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS11455 FitnessBrowser__HerbieS:HSERO_RS11455
LFCPLALLPQGWRSDVLLRWDGAGRLTHVTPDSARGSAALASGPVLPGMPNLHSHAFQRA
MAGLAETMGSPADSFWSWRELMYRFAQRLQPRQLEAIARQTYIEMLKAGYTSVCEFHYLH
HAPDGAPYADPAEMAWPLLQAAGQSGIGMTLLPVLYQQGGLGGRPVSAEQRRFVAAPSWL
LGLRERLLQHMPENDMRRYGVAPHSLRAVAPTGLEELLSGLAGQPGGSDAPIHIHVAEQL
REVEDCLAWSGQRPVQWLLSSQPVDARWCLVHATHMDDEEYRAVAGSGAVVGLCPTTEAN
LGDGVIDAPRLIDSAARWGIGSDSNIAISLRAELRLLEYAQRLHHRRRNVLAVIDAPAVA
DRLFCQALAGGAQAAGRAVAGLMPGQRADLVVLDPDHVNLAQRSSTQLLSALVFCEHDGP
MIGDVYVGGRQVVKEGRHALDDRAREDYRHALAALLKD