PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS11645 FitnessBrowser__HerbieS:HSERO_RS11645 (1121 amino acids)

SeqID: HSERO_RS11645 FitnessBrowser__HerbieS:HSERO_RS11645
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129007: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS11645 FitnessBrowser__HerbieS:HSERO_RS11645
MQFTRDPLWYKDAVIYQIHVKSYFDANDDGIGDFAGLIQKLDYITGLGVNTIWLLPFYPS
PRRDDGYDISEYKNVHPDYGNMSDVRRFIAAAHEHGLRVITELVINHTSDQHPWFQRARR
ARPGSVARNFYVWSDDDKSYADTRIIFVDTEKSNWTWDPVAKAYFWHRFYSHQPDLNFDN
PHVLKAVLNVMSFWLDLGIDGLRLDAVPYLIEREGTSNENLPETHAILKRIRAEMDSKYP
DRMLLAEANMWPEDVQQYFGDSDECHMAFHFPLMPRMYMALASQDRFPITDILRQTPDIP
ADCQWAIFLRNHDELTLEMVTDAERDYLWNHYAPDRRARINLGIRRRLAPLVERDWRRIQ
LLNSFLLSMPGTPVIYYGDEIGMGDNIHLGDRDGVRTPMQWTPDRNGGFSRVDPARLVLP
LLMDPQYGYQTINVEAQSADRHSMLNWMRRLLNVRKQHQAFGRGSLALVYPSNRKIFAYL
REFTDPRPGGATETILCVANVSQSAQAVELDLSAFAGRIPIEMMGGAAFPPIGQLNYLLT
LPPFGFYWFLLAPEANMPSWRAPTPEPLPEYVTLVLRKGVQEIMEPPARKLLEQEVLPHY
LLKRRWYAGKQRQIDKVEMREATTLPMSRTRPGALPIVLTEIDVHSSGTEGDAGAGSVQR
YLLPLGFIREEDTVSALPHQLALSRVRRGRNVGFLTDAFALDSFIVAVLELLADSASIKT
RSGQLRCIPTAAFDPAILTTALELRRITQEQSNSSVVINNVMMMKVLRQVNPGIHPEIEM
GRYLTERGFANVAATLGEVVRVADDGTPYALIVLQRYVDNQGDAWQWSMDTLERAIQSEA
LDESQRQPNTRPQDAQGIDDNSALVELVTFSRLLGQRLGEMHSLLGQPSDDPAFDPQTIG
EPVWRSWAQGAAQQLEAALDILRQKEEWPDAAEAHHAARLLAQRERLLERIHPLAQAAEG
SLAMRLHGDLHLGQVLIAFNDVYIVDFEGEPARPLEQRRAKGSPLRDVAGLLRSFDYAAA
FGHTMGPTDLDEAALASKKQILQRFAPACQAALLEGYRLGNPLLEQSLPLDAQALLLDLF
TLEKAAYEICYEAANRPTWMHVPLRGLYLIANRILGEEDGA