PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS12245 FitnessBrowser__HerbieS:HSERO_RS12245 (385 amino acids)

SeqID: HSERO_RS12245 FitnessBrowser__HerbieS:HSERO_RS12245
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595698: 8-amino-7-oxononanoate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS12245 FitnessBrowser__HerbieS:HSERO_RS12245
MHDFHQQLDELARQSLLRTRRTVSSAQGPLLTVEARPYLSFCSNDYLGLANHPAITAAAV
TALGQYGMGAAASALISGHSAAHETLERALAEFTGLPAALGFGSGYMANMGVIGALVGAG
DTVVVDRLSHASLIDGARLSGASLKVFPHNDTQRLDHVLARCGSGRKLVVTDAVFSMDGD
QAPLSELAEICARHGAWLLVDDAHGFGVLGPQGRGSLAHAGVRAPHVLCMGTLGKAAGVA
GAFVAGERDLLAWIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLR
KGLAGLSWQLLPSQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRIS
LSALHTQEQVAQLIEALVQAEQVAA