PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS13795 FitnessBrowser__HerbieS:HSERO_RS13795 (647 amino acids)

SeqID: HSERO_RS13795 FitnessBrowser__HerbieS:HSERO_RS13795
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597280: probable asparagine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS13795 FitnessBrowser__HerbieS:HSERO_RS13795
MCGITGIFSLHGQAEIDRQLLARMNETQHHRGPDEGGLHVEAGLGLGHRRLSIVDLSSGQ
QPLFNEDGSVVVVFNGMIYNYRELMRELTALGHQFRSRCDTEVIVHAWEQWGRDCVTRLR
GMFAFALWDRQRQTLFVARDRLGIKPLFYALLPDGRFLFASELKALLADPALPRALDPCA
VEEYFAYGYVPEPRTILRGVHKLSPGHTLLLQRGATRGQPQQQRYWDIPFQLGSQRPAEE
IAAELLERLREVVGSHLVTDVSLGGFLSGGVDSSAVVAMMAQLTGESVNTCSIAFNDPAY
DESHYAAQVAQQFRTRHHMRTVDKDDYGLIDLLAKLYDEPYADSSAIPTYRVCQLAKESV
TVALSGDGGDENFAGYRRYRYAMNEEKVRARLPEGLRKPLFGFLGRHYPKADWAPRVLRA
KTTFEALARDTVEGYFHGVSIMPDRVRQRLLSPGLRRELQGYQAIEVMRGHAAQAPTEDA
LSLLQYLDLKTYLPGDILTKVDRASMAHALEVRVPLLDHQFVEWVSGLPPALKLHEGQGK
YIFKKALEGTLSEDILYRRKMGFSIPLSSWLRGPLRQVVQDSLLGPLLRQTGLFDMDFVQ
ELVEQHQSGRRDHAAPLWALLMFAAFLRNVLQAGAGAAPQQPAARAA