PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS15460 FitnessBrowser__HerbieS:HSERO_RS15460 (466 amino acids)

SeqID: HSERO_RS15460 FitnessBrowser__HerbieS:HSERO_RS15460
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118595566: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS15460 FitnessBrowser__HerbieS:HSERO_RS15460
MTATQVRTRFAPSPTGYLHLGGARTALFSWAYARRFGGTFVLRIEDTDVERSTPEAVQAI
IEGMQWLGLEHDEGPFYQMKRMDRYREVIAQMLEQGTAYYCYCTPEEVEAMRERQRAAGE
KPRYDGTWRPEPGKTLPAIPEGRKPVVRFKNPQDGEVSWNDVVKGPITISNRELDDLVIA
RPDGTPTYNFCVVVDDWDMKITHVIRGDDHVNNTPRQINILKALGGTLPEYGHVPMILGA
DGEKLSKRHGAVSVMDYPAQGYLPEAMLNYLARLGWSHGDDEIFSMQQFCAWFDLDHLTK
APAQFNPEKLNWLNNHYIKLADNARLAGLVRPLLEAQGAVFEGAPDLAAVIALLKDRANT
VNEIAAAALMFYRQPAPDAALVAQHITEAIKPALADFAQRVATVEWTKEAIAPMIKEVLA
AHGIKMPQLAMPLRLIVAGQLQTPAIDAVLQLFGREAVQARLSGYL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory