PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS16580 FitnessBrowser__HerbieS:HSERO_RS16580 (458 amino acids)

SeqID: HSERO_RS16580 FitnessBrowser__HerbieS:HSERO_RS16580
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 121677: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS16580 FitnessBrowser__HerbieS:HSERO_RS16580
MSQYDYDLFTIGGGSGGVRAARFASQAGARVGLAEKGDLGGTCVNLGCIPKKLMSYSAHY
HEEFADAAGYGWTLNGQPSFDWSALMANKDREIAHLNDIYLRLLDNAKVSLHRGFAKVED
AHTVNVDGQRFTARHILVATGGRPDKPAIPGAELGITSDDFFHLKALPQRAVVLGGGYIA
VELASILNGLGCEVTLVYRRERLLRNMDADLGIHLADEMAKKGIRIVFNASIEAIEAEQA
GEASEASVKTVRLTNGEALSAQCVLFATGRTANTAGLGLQEAGVKLKANGAIEVNQDFES
SVPSILAVGDVIDRVALTPVALAEAMAVVSRLFGKGERGMSYANIPTAVFSHPNVGTVGL
SEEEARQQFGELRIFKTDFKPLKNTLSRNTERTFMKLVVDARTDRVLGVHMVGGDAGEVI
QGFAVALQCGATKAQFDTTIGIHPTSAEEFVTLRTPVA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory