PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS17540 HSERO_RS17540 glutamine ABC transporter ATP-binding protein (240 amino acids)

SeqID: HSERO_RS17540 HSERO_RS17540 glutamine ABC transporter ATP-binding protein
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS17540 HSERO_RS17540 glutamine ABC transporter ATP-binding protein
MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV
DGISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEANALASEL
LAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRVMQ
SLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIENSCNPRLREFLKHVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory