PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS18420 FitnessBrowser__HerbieS:HSERO_RS18420 (443 amino acids)

SeqID: HSERO_RS18420 FitnessBrowser__HerbieS:HSERO_RS18420
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS18420 FitnessBrowser__HerbieS:HSERO_RS18420
MKQPSYPRHIDLAPVHHVQGTVKLPGSKSISNRILLLAALSGGTTRIFDLLASDDTLVML
MALQTLGVKWEQIEGTQDYIVHGVNGVLPVHQADLFMGNAGTAIRPLTAALAVLGGDYTL
HGVPRMHERPIGDLVDALNAVGMRIDYTGNPGYPPLHIRRGQLTSSRMKVRGNVSSQFLT
ALLMAAPLMAREEAMQIDVVGELISKPYIEITLNLMRRFSVEVERDGWQQFIIKPGQHYR
SPGSIHVEGDASSASYFLAAGAITGGPIRVEGVGRDSIQGDVRFVEALELMGATITMGEN
WIEASSNGPLKAVDADFNHIPDAAMTIAVAALYADGPSTLRNIASWRVKETDRLAAMATE
LRKLGAQVEEGADYLTVTPPAEIGTATIDTYDDHRMAMCFSLASLDGALRRGNRVRINDP
KCVAKTFPDYFDVFKKIAEQTLI