PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS18505 FitnessBrowser__HerbieS:HSERO_RS18505 (526 amino acids)

SeqID: HSERO_RS18505 FitnessBrowser__HerbieS:HSERO_RS18505
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS18505 FitnessBrowser__HerbieS:HSERO_RS18505
MPHTDLTSSASSTPIRFGAQPLAIEDVVALARRERSAQLHDAPDFRARIARGADFLDRLL
REDGTIYGVTTGYGDSCTVTVPPELVPELPHHLYTYHGCGLGALFTPEQARAILAARLNS
LCQGFSGVSVALLEQITGLLQHDLLPQIPCEGSVGASGDLTPLSYLAAVLCGERDVWREG
ATVPAAQALAAAGMTPLRLRPKEGLAIMNGTAVMTALACLAFDRARYLCQLATRITAMSS
FTLDGNAHHFDATLFSAKPHPGQQQVAAWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIG
VLNDALPSLRQFIENELNSANDNPLIDPDGERVLHGGHFYGGHIAFAMDSMKTAVANVAD
LLDRQMALMVDQRYNNGLPANLSGAQGARAPINHGLKALQISASAWTAEALKLTMPASVF
SRSTECHNQDKVSMGTIAARDCLRVLELTEQVAAALLITVRQGVWLRSQRQQVGDTPLQD
LPAGRLAAMQAALSEDIAVVAEDRMLEPDLRLLLQRIRAQAWSLYD