PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS19635 FitnessBrowser__HerbieS:HSERO_RS19635 (353 amino acids)

SeqID: HSERO_RS19635 FitnessBrowser__HerbieS:HSERO_RS19635
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 6685241: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS19635 FitnessBrowser__HerbieS:HSERO_RS19635
IRKIFQPFLVLLCLVAAAAAQAQNLPNVVILATGGTIAGTGATTTTTVGYTAAKVGVDAL
IAAVPELKKVANVRGEQVMQIASENMNNDAWLKLGKRVNTLLAQSDVDGIVITHGTDTIE
ETAYFLDLVVKSKKPVVIVGAMRPSTAISADGPINLYNAVLLAGSKEAIGKGVLVTLNDQ
INAGREVTKTNTSTLDTFKTPELGFLGYIQGSKPYFYRQSTRKNTVDTPFDIMNLDKLPQ
VDIVYGYANMNPIALNAFVAAGAQGIIHAGVGDGSLNNTVVPSLTEARKKGVVIVRSSRV
GQGIVARNGEADDDKLDFVVSDTLNAQKARILLMLALTKTTDTKEIQKMFWEY