PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS20095 FitnessBrowser__HerbieS:HSERO_RS20095 (316 amino acids)

SeqID: HSERO_RS20095 FitnessBrowser__HerbieS:HSERO_RS20095
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141728: Ribose transport system permease protein rbsC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS20095 FitnessBrowser__HerbieS:HSERO_RS20095
MSRLRSTLEQRPWVWSFLGAALLWLATLAVAGPDAAVNIGLSAFSFGALMVLVGLGQMLV
VTTGPGNIDLSIPSTIALAGALGLRTMGGEDGGILLGLVVTLGVGVGIGLANYLLIRLLQ
IPPIIATMSSSFILQSLAIHVGQGLKITPPQLLASFATGWLLHVPQLAWLVLAVALGLAW
ILGRTLFGRFLSAVGQNARAAWLAGIGVERIRCLCYVLCAVFAALCALLIAGFSGGASLD
MGNEYLLMSVAVVVIGGTSVTGGRPSVAGIWGAALFLYFTNTLLNVVGLSAGERSVLSGL
IIIAVIVCSGRRRQYR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory