PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS20525 FitnessBrowser__HerbieS:HSERO_RS20525 (803 amino acids)

SeqID: HSERO_RS20525 FitnessBrowser__HerbieS:HSERO_RS20525
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Periplasmic            0.12
    Cytoplasmic            0.04
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS20525 FitnessBrowser__HerbieS:HSERO_RS20525
MSMLHPPRFALQSSEGNHLCLKADTGAVIELFVLEEDIIRVLVLPEGKLQGPASWAVAPG
AEDVPLQGRDRRDLSGFALPSFALRTTPGQLQIETALIRLSIALEGGFCQWELRQEGQWQ
SVLADRPTQAYNFGYWDEQVYHYLRRQPEEMYFGLGERAGDMNRAGQSYEMRNIDAMGYS
ARNTDPLYKHIPFYITWLPKTGAGFGLFYDTLSDCRFDMGRELDNYHGHYRYFTAPHGDL
DYYFIASPGTPLAATRRFTWLTGRPAWMPKWGLGYSGSTMSYTDAPDAQVQMGQFIAKCR
EHDILCDSFHLSSGYTSIGPKRYVFHWNTEKFPDPHGFVRSYLDASIHLCANIKPCLLRD
HPQFEQARQAGLLICDSQGEPAWVQFWDEVGAYLDFTNPATLDWWRANVKQALLDYGVSA
TWNDNNEFEVWTGDAYAHGFGQQYPVRQAKVLQTMLMMQASRQAQLEAAPQRRPFLVSRS
GGAGMQRYVQTWSGDNYTSWETLRYNLKMGLGLALSGVSNIGHDIGGFSGPAPAPELLVR
WVAFGVFMPRFSIHSWNDDKTVNEPWMYPEVTAQIAALIKLRYRFIPYLYELLWQSTQDY
QPVLRPTFAEFPHDRRCLDECDDMMLGSAMLVAPVVEQGQTERRVYLPSGARWVSYWSGE
RYEGGQEISLPAPWDQPVMLLREGAVIPMNVAQQQFDVRADERAFLVVPYKEQGEASGAC
VEDDGHSQAWRDGEQGRWQVRARSDAAAVTLEVGREDRLPVAAETIDIFLPASEQRPVRA
TQARIVSEQRSQGWRRLTLALST