PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS21060 FitnessBrowser__HerbieS:HSERO_RS21060 (581 amino acids)

SeqID: HSERO_RS21060 FitnessBrowser__HerbieS:HSERO_RS21060
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598655: probable glutamine amidotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS21060 FitnessBrowser__HerbieS:HSERO_RS21060
MCGIAGILMNQAALPDVSVLRAMAASMAFRGPDDEGIHVAPSIGLVHRRLSIRDLSSAGH
CPMSTADGRYTLVFNGEIYNWRELRAELESMGQVFHSQSDTEVVLQAYNAWGTDVIARLE
GMFALAVWDDQAGSLFLARDRMGEKPLYYARTDQGLAFSSSPSAVLHATGPLPLDPMGIA
CHLSHTFIPATHTGWAGLRVLAPATWLLAHADGRIEERRYWDFPRTSPKPIAWADALSEV
ESILDDSVQRTLDADVEVGVFLSGGVDSSLIAALAARHNKRVKAFSIGFAEVQYNELPYS
EAVAKHLGIEQHVHIVTCDDIIDALPHLVRQYGQPFGDASALPTYLVSRLARQHAKVCLS
GDGGDELFGGYWRLQAGVYAARYGALVPTWLRRHAVPAVASRLGRLGRRLDAMNTLSLAE
AGSGYTNSESWFNHLQQVAGPNLLPALDMEKLVAARVGKATNRPEASIVQRLLYDDIQIQ
FPDALLAKVDVASMAASLEVREPFLTPRLLEFAWGLPDHTKLKWGNRKALLKEIAARHVP
RDVVYRPKMGFASPLDKWFKGELGEYGASLFEHSVAVASGY