PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS22485 FitnessBrowser__HerbieS:HSERO_RS22485 (308 amino acids)

SeqID: HSERO_RS22485 FitnessBrowser__HerbieS:HSERO_RS22485
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597407: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS22485 FitnessBrowser__HerbieS:HSERO_RS22485
MLTLHREVRMPTPPAGRCKTPLRIDAHQHFWRYRSEDYPWIGAGMDLLAQDRLPYQFQPL
LEAQGLHASITVQARQGRDETAFLLEMARRDKRIAGIIGWEDLSAPDLAEQMERWGRHKL
LGLRHQLQEHDDANTLLTPAPLDQGVRWLQERSYTLDVLAHERHLPQLRQFCARHDQHWV
VLNHLGKPALKEFRKGRAAFERWRQELRELTAMPHVACKISGLLTEADWLRGLCTRDFEH
IVQCLDTALDLFGPQRLMFGSDWPVCLLAASYSRVVTVVREWSATRLCPSDQDALWGESS
ARIYGLLT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory