PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS23260 FitnessBrowser__HerbieS:HSERO_RS23260 (334 amino acids)

SeqID: HSERO_RS23260 FitnessBrowser__HerbieS:HSERO_RS23260
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [9 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 585411: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS23260 FitnessBrowser__HerbieS:HSERO_RS23260
MKQIAHFRYTLLAAAVALLLPLLLPSGTLATEVLVFALAALGCNLLLGYTGLMSFGQGIF
FGVGSYTAGVVLLQLKLALLPALALAALGGALVALLVGWFSIRQRGTYFVMLTLAFAQMF
YFLAYTMKDVTGGDNGLLDIPRPPLALFGLTLLPTTSSWQYYTVVAILFVLVFWLLQRVV
DSVLGKTLLAVRENEARASALGYDVRLLKLAAFVISGAVTGLAGGLHAMMTGVAPLSNIE
YHTSEAILVMTVIGGTGNLFASVLGASFYVLVGNWLSTLWPRWLMLLGLLLIAVSLYMQK
GLFGLAMKIIDAVRGNKGASAQAATATATKEKHS