PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on HSERO_RS23930 FitnessBrowser__HerbieS:HSERO_RS23930 (784 amino acids)

SeqID: HSERO_RS23930 FitnessBrowser__HerbieS:HSERO_RS23930
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>HSERO_RS23930 FitnessBrowser__HerbieS:HSERO_RS23930
VSHKLTKRQAAPTRRPRLALAVTLCALACSAVLTGPTAHAQANPALLGDKTAFIDDLLRQ
MTLEEKIGQLRLISIGPEMPAKKLAEELAAGRVGGTFNSVTRPENRPLQDGAMRSRLKIP
MFFAYDVIHGHRTTFPIGLGLASSWDMDVVARAMRVSAEEAAADSIDMTFAPMVDISRDP
RWGRTSEGFGEDPYLVSRIAEVSVRALQGDTKPIAANRVMASVKHFALYGAVEGGRDYNV
VNMDPQRMYNDYLPPYRAAIDAGAGAVMVALNSINGAPATSNTWLLQDLLRRDWGFKGLT
VSDHGAITELVNHGVAQNDSEAARLSMKAGTDMSMADQVYIKQLPELVRSGKVSQQELDN
AVRDILGAKYDLGLFKDPYVRIGRAADDPPDVYADSRLHRRDAREVAQQSMVLLENRNAA
LPLKKNARIALVGPLADSHIDMLGSWSAAGKDKQTITLRQGLQAALGGQGKLVYARGANI
TEDKHIVDYLNFLNWDDPEVVQDKRSPKAMIDEAVKAARHADVIVAAVGESRGMSHESSS
RTSLSLPQSQLDLLKALKATGKPLVLVLMNGRPLDLNWARENASAILETWYTGTEGGNAI
ADILFGDVNPSGKLPITFPRSVGQIPSYYNHPRVGRPYTEGKPGNYTSQYFDEPNGPLYP
FGYGLSYTEFKLSEVSLSQPSMSADGKVEASVTVKNVGRRAGATVVQLYLRDVAASVVRP
VKELKDFRKVMLQPGEEKQVQFSIDRKALSFYNAKLEYVAEPGEFQVQIGLDSKEVKTAS
FNLQ