PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0134 FitnessBrowser__Dyella79:N515DRAFT_0134 (466 amino acids)

SeqID: N515DRAFT_0134 FitnessBrowser__Dyella79:N515DRAFT_0134
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 30173177: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0134 FitnessBrowser__Dyella79:N515DRAFT_0134
MTVRTRFAPSPTGFLHIGGARTALYCWLEARRRGGQFVLRIEDTDRERSTQEAVQAILDG
MSWLGLVHDEGPVYQTHRLDRYKQVADELLKAGKAYYAYESKEEIEAMREAAMARGEKPR
YNGYYRDRNESFREDPNRVIRFKNPLEGSVVFDDKVKGRVEWANAELDDLVIFRSDGWPT
YNFAVVVDDIDMGITEVIRGDDHVNNTPRQINIYKALDKPVPEFAHLPMILGPDGQKLSK
RHGAVSVMQYRDDGFLPHALLNYLVRLGWSHGDQEIFSPQEMIELFDIGDVNKAASRFDV
TKLSWLNQHYLKTDEPQAIAPEFEYQLQLAGIDYSKGPLPADVIVALRDRVQTLKEMAER
AKIWYGPIVEWDDKAVAKHLQNDGAVAVLEEAKALFAACEWTPEAIHQAVEQIAARLELG
MGKIAQPLRVAMTGTQVSPSIDHTVYLAGREEALKRIDDAIARARG