PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on N515DRAFT_0354 FitnessBrowser__Dyella79:N515DRAFT_0354 (461 amino acids)

SeqID: N515DRAFT_0354 FitnessBrowser__Dyella79:N515DRAFT_0354
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>N515DRAFT_0354 FitnessBrowser__Dyella79:N515DRAFT_0354
MADIKTFHLPDLGEGLPDATIVEWHVKEGDYIKLDAPLCSMETAKAVVDVPSPYTGTVQK
LYGAPGDIIETGAALADFAPDPNAKQRAEAEATGHHHGPKKSVGSPAPDNAAKVVASDEG
GEVEAKGEREDEGTVVGAMVSGNTVHVEQVSSAGGVKAVPAVRALAKKLKVDLTRVRPTG
ADGVVTLQDVKTAAANGSAPLGAAPARAVPASAGRHLAPELPEPGAAPSRTAVSLAGKPV
RTAPPSVQASGQPEQLKGVRRNMARVMAEAHANVVPTTLVDDADLHGWIGKQDITARLIR
AIVAACKAVPALNAWFDGKNLTRTLHPHVDIGIAVDTEDGLFVPALRNADVLDGAGVRAA
IKRLRAQVEDRSIPASELSGYTISLSNFGMFAGRYATPVVVPPTVAIIGAGKLCHDVVAV
MGGIEVHRRMPISLTFDHRAATGGEAARFLKALLDDLSLPN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory